04-19-2020, 01:46 PM
Try this...
Go to gisaid.org
Click on the genome tree image in the upper right to get to a page that is just the tree. "Genomic epidemiology of hCoV-19"
When it comes up on my computer, the tree fills most of the screen.
There is a little tab at the top of the left side. Click on the tab to pop out a settings pane.
In that pane, under "ncov" select "North America" to limit to the genomes from North America.
Then change "Color by" to Admin Divisions (ie, state).
In what was the main window (now shifted right), find "Phylogeny v" and click on the down arrow. That will show all the states in US, Mexico, Canada. If you place your cursor over "California", the icons belonging to California will get a little bigger. (sliding on/off the state name helps your eye detect them).
You can also adjust the date slider to watch as things arrive,
If you type "USA/CA" into "Search strains", you can see only 18 California genomes are in this database, with only two submitted for Santa Clara County (both essentially identical, submitted March 4 (I suspect for the case admitted Feb 27 with suspect community spread)
If you move your mouse over the circles, you'll see more info.
Go to gisaid.org
Click on the genome tree image in the upper right to get to a page that is just the tree. "Genomic epidemiology of hCoV-19"
When it comes up on my computer, the tree fills most of the screen.
There is a little tab at the top of the left side. Click on the tab to pop out a settings pane.
In that pane, under "ncov" select "North America" to limit to the genomes from North America.
Then change "Color by" to Admin Divisions (ie, state).
In what was the main window (now shifted right), find "Phylogeny v" and click on the down arrow. That will show all the states in US, Mexico, Canada. If you place your cursor over "California", the icons belonging to California will get a little bigger. (sliding on/off the state name helps your eye detect them).
You can also adjust the date slider to watch as things arrive,
If you type "USA/CA" into "Search strains", you can see only 18 California genomes are in this database, with only two submitted for Santa Clara County (both essentially identical, submitted March 4 (I suspect for the case admitted Feb 27 with suspect community spread)
If you move your mouse over the circles, you'll see more info.